It’s a tricky area to work with, but one note that if you want to have 3 columns of elements, including the logo, you want to make sure the containers side-by-side are coded correctly based on how the Bootstrap framework works…right now your header area looks like this:
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You have some nested div’s which is causing the issues because they should be fluid. Judging from the visual design of the top header, you need 3 columns. Right now the container is using a div with a class of “col-md-12” which means it’s a full width container and with your own nested columns (containers). To utilize the bootstrap responsive structure, and to use nested columns, you may want to refer to this:
http://getbootstrap.com/css/#grid
What you are trying to do is a little code intensive because of the changes you need to make, but refer to the bootstrap guide and especially about nested columns.